Spring 2020 Lecture Materials
Unit 1: Macromolecular structure and function
March 31
Lecture 1: Introduction to Protein Structure [slides]
Installing PyMol:
DOWNLOAD URL: https://pymol.org/ep USERNAME: jun2020 PASSWORD: alphahelix
Installing PyRosetta:
DOWNLOAD URL: http://www.pyrosetta.org/dow USERNAME: teaching PASSWORD: scorefunction
Additional reading: [PyMol] [PyRosetta]
Homework #1: Due 11:59pm Friday April 10 [hw#1]
April 1
Lecture 2: Protein Structure Modeling 1: Forcefields [slides]
PyRosetta Demo #1: [ipynb][demo1.py]
April 7
Lecture 3: Protein Structure Modeling 2: Structure Prediction and Protein Design
Homework #2: Due 11:59pm Friday April 17
April 9
Lecture 4: Nucleic Acid Structure